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Dice Score

The Dice score measures segmentation accuracy by comparing overlap between predictions and annotations — higher is better.

The Dice coefficient (also called F1 score for segmentation) measures how well the predicted segmentation overlaps with the ground truth annotations. It ranges from 0 to 1:

0.0 = No overlap at all (complete failure)

0.5 = Partial overlap

1.0 = Perfect overlap (predictions exactly match annotations)

The chart shows

Training Dice (teal): Accuracy on training patches.

Validation Dice (purple): Accuracy on held-out validation patches. This is the more important metric as it shows real-world performance.

What to look for

Good Progress: Both curves increase over time, with validation Dice reaching 0.7+ for typical biomedical segmentation tasks.

Gap Between Curves: A large gap where training Dice is much higher than validation Dice indicates overfitting.

Plateau: When curves flatten, the model has converged. Further training is unlikely to improve results significantly.

Typical Values: Dice scores of 0.8-0.9 are considered good for many biomedical applications. Scores above 0.9 indicate excellent segmentation quality.

Part of DFG Priority Programme SPP2332 "Physics of Parasitism"