Skip to content

Workspace Backup & Restore ​

Download your entire workspace as a ZIP file and restore it later to continue your work across sessions.

Why This Matters ​

This application uses session-based storage: your workspace is kept for up to 48 hours after your last activity, then it is deleted automatically. Your login session expires on the same 48-hour schedule, and logging out (after its confirmation dialog) deletes the workspace immediately. Anything not downloaded before then — uploaded files and generated results alike — is gone.

The workspace backup/restore feature solves this by letting you ​

  1. Download everything before ending a session

  2. Restore your workspace when you return

Download Workspace ​

Click the download icon (⬇️) next to the 'Workspace' header in the sidebar. This creates a ZIP file containing:

  • All uploaded files (raw images, annotations, models)

  • All generated results (segmentation, denoised images, meshes)

  • Complete folder structure preserved

The archive is named workspace_<timestamp>.zip (the timestamp is the download time). Cache directories are left out to keep it small — .thumbnails, .slices, .mesh-previews, .preprocess, and .segcleanup are all regenerated automatically after a restore.

A confirmation dialog shows file count and estimated size. Large workspaces may take several minutes to prepare.

Restore Workspace ​

  1. Select 'Restore Workspace (ZIP)' from the upload category dropdown

  2. Click Upload and select your workspace ZIP file

  3. Confirm the restore (warning: this replaces your current workspace)

  4. Wait for extraction to complete

Restore progress runs through several phases, shown as it proceeds: uploading the ZIP, validating the archive (it must contain a metadata.json), clearing the existing workspace, extracting files, and updating metadata. Thumbnails are then regenerated in the background.

Important Considerations ​

  • Restore REPLACES your current workspace — existing files are deleted

  • Only restore from workspace ZIPs created by this application

  • The ZIP preserves folder structure, so files return to their original locations

  • Models and results work immediately after restore

Best Practices ​

  • Download your workspace at the end of each session

  • Keep workspace ZIPs organized with dates in filenames

  • Verify restore by checking file counts match

Part of DFG Priority Programme SPP2332 "Physics of Parasitism"