Skip to content

File Browser & Workspace

Manage your workspace files: upload data, organize by category, download results, and backup/restore your entire workspace between sessions.

The File Browser provides complete control over your workspace files. Since this application uses session-based storage (no permanent backend storage), understanding the workspace system is essential for preserving your work.

Key Features

File Organization

Files are organized into categories

  • Raw Images: Source TIFF stacks for processing

  • Annotations: Training masks and labels

  • Inference Data: Images for model inference

  • Model Files: Trained model weights (.pth) and configs (.json)

  • Results: Outputs from segmentation, denoising, and mesh generation

File Operations

  • Upload: Add files via button or drag-and-drop

  • Download: Save individual files or batch download as ZIP

  • Rename: Change filenames (extension must stay the same)

  • Delete: Remove files (with confirmation)

  • View Info: See file details and processing history

Workspace Persistence

Important: All data exists only for your current session. When you log out or your session expires, files are cleared. Use the workspace download/restore features to save and continue your work across sessions.

See the related articles for detailed information on each feature.

Part of DFG Priority Programme SPP2332 "Physics of Parasitism"